--disclaimer-- This reply is not meant to imply or infer any acknowledgement or support for file exchanges in violation of copyright laws in respective areas. --disclaimer--
The short technical answer is yes. Torrent chunks the file collection into blocks and each block is verified by an md5 hash or some other parity-checking algorithm, so that when the download of a block is finished, it can checksum the bytes against that hash value and declare that the block is complete, or got corrupted and needs to be resent.
it also continues to test those blocks against files you already have because if they are detected to be corrupted or deleted, your 'seed' has to be removed from the valid seed list. Otherwise, serving a block from your modified file won't mesh right with a block from someone else's unmodified copy and the file to all subsequent receivers is hosed.
So yeah, you need to have your subsonic server be looking at copies of the files that are not being served by torrent.